iCdR700 2020-06-25 18:29
Independent Section Contains tests that are independent of the class of modeled organism, a model's complexity or types of identifiers that are used to describe its components. Parameterization or initialization of the network is not required. See readme for more details.

Consistency


Annotation - Metabolites


Annotation - Reactions


Annotation - Genes


Annotation - SBO Terms





Total Score
86%
Score per Category
0%10%20%30%40%50%60%70%80%90%100%scoreconsistencyannotation_metannotation_rxnannotation_geneannotation_sbosection
Specific Section Covers general statistics and specific aspects of a metabolic network that are not universally applicable. See readme for more details.
SBML
Basic Information
Metabolite Information
Reaction Information
Gene-Protein-Reaction (GPR) Associations
Biomass
Biomass Production In Complete Medium

Using flux balance analysis this test optimizes the model for growth using a complete medium i.e. unconstrained boundary reactions. Any non-zero growth rate is accepted to pass this test. Implementation: Calculate the solution of FBA with the biomass reaction set as objective function and after removing any constraints from all boundary reactions.

Energy Metabolism
Network Topology
Matrix Conditioning
Experimental Data Comparison
Misc. Tests
Environment